When you lose the egg again, follow the straight path, and you will get an Upgrade orb directly in front of you.Once you are done with the second arena, go right and jump onto the boat which is carrying the egg.Once you get down from the boat, you will be able to see an upgrade orb floating over the water.Destroy those roots and follow the path which leads to the orb. You can turn around, and you should see some glowing roots. You will be able to see the orb that is placed in an elevated position. When you have earned your Shuriken Spitter weapon, destroy all the roots in front of you and reach the water.Following up this path, you will get the orb. Defeat those enemies and shoot a marked target to drop a column. When you first face the Hattori, you will find an orb on the top of the ledge in that room.After you leave the room, you will find another room with sliding elevator platforms.You will find another orb on the top of the central pillar.Once you complete the first arena and reach a platforming station, you will find another orb.Don’t take that road and instead climb up on the platform that is on the right with your grappling hook and once you look up you will find some vines. After you complete the fight with the Mogura Twins, you will find a path to the ground level.After you run back to the tower structure, you will another orb directly on your path.Directly above the stairs upfront, there is an upgrade orb. Look at the wall on your right and hop over the wall. Once you obtain the Basilisk, reach the rabbits.After taking down the Mogura Twins, you can see a sacred tree, from where you can drop the platform and obtain the Upgrade orb.You have to climb some rocks to reach an upgrade orb. When Tanuki jumps into the water, instead of following him, take the right.After your fight with the Laser Shogun, you will have to chase Tanuki again.When you are chasing Tanuki, you will be doing a wall run on a Staligtite and land on the other platform.After the cutscene, you will see the Kumo Brotherhood Gates, on the lower left, you will find a weapon Upgrade orb.
After you get the grappling hook, and descend to the narrow ledges, you will find an Upgrade Orb there directly in front of you.